Chip-Seq data analysis - (Jun/18/2014 )

Dear All,

I have Chip-Seq data in bed format, I would like to analyse my data , can someone please tell me , how can I analyse my data online, does anyne know  which company provides online tool or software  to carry out this kind of work. 

Waiting for your reply.

Thanks and regards

Siddharth 

Can try Galaxy.

Or on Linux- Tophat, Cuffliink, Cuffdiff