Top : Research Tools : Online Tools : Sequence Analysis : Sequence Patten Search
Protocols
  • Tool/Software APPROX (ALGGEN)
    Approximate search for patterns.
    http://alggen.lsi.upc.es/recerca/search/approx/int...
    Added: Thu Feb 05 2009, Hits: 346, Reviews: 0  Write review   Cached
  • Tool/Software CONREPP (ALGGEN)
    Searches for direct consecutive repeated patterns (IUPAC simbols).
    http://alggen.lsi.upc.es/recerca/search/conrepp/in...
    Added: Thu Feb 05 2009, Hits: 317, Reviews: 0  Write review   Cached
  • Tool/Software Exact Sequence and Pattern Search (Department of Marine Sciences, University of Georgia)
    Find short sequences in genes or intergenic regions in Roseobacter genomes.
    http://roseobase.org/espsearch/index.cgi
    Added: Thu Feb 05 2009, Hits: 328, Reviews: 0  Write review   Cached
  • Tool/Software FREQ (ALGGEN)
    Exact search for patterns.
    http://alggen.lsi.upc.es/recerca/search/freq/freq....
    Added: Thu Feb 05 2009, Hits: 336, Reviews: 0  Write review   Cached
  • Tool/Software MREPATT 1.0 (ALGGEN)
    Searches for direct and inverse consecutive repeated patterns (ACGT).
    http://alggen.lsi.upc.edu/recerca/search/mrepatt/
    Added: Thu Feb 05 2009, Hits: 338, Reviews: 0  Write review   Cached
  • Tool/Software Protein motifs Search (EBI)
    Search your query sequence for protein motifs, rapidly compare your query protein sequence against all patterns stored in the PROSITE pattern database and determine what the function of an uncharacterised protein is. This tool requires a protein sequence as input, but DNA/RNA may be translated into a protein sequence using transeq and then queried.
    http://www.ebi.ac.uk/Tools/ppsearch/index.html
    Added: Thu Feb 05 2009, Hits: 468, Reviews: 0  Write review   Cached
  • Tool/Software Protein Sequence Pattern Search (Human Genome Sequencing Center, Baylor College of Medicine)
    http://searchlauncher.bcm.tmc.edu/seq-search/prote...
    Added: Thu Feb 05 2009, Hits: 132, Reviews: 0  Write review   Cached
  • Tool/Software Search Database for Sequence Pattern (SCANSITE)
    This program allows you to search protein databases for occurrences of any sequence string, such as YEEI or PXXP. The output consists of a list of protein IDs matching that string, including the number of occurrences within each protein (in case there are multiple YEEI matches, for example). Leaving a position blank means no restriction exists; placing an X there requires some amino acid to be in that position.
    http://scansite.mit.edu/dbsequence_one.html
    Added: Thu Feb 05 2009, Hits: 348, Reviews: 0  Write review   Cached
  • TRANSPO 1.0 (ALGGEN)
    Searches for transposons.
    http://alggen.lsi.upc.es/recerca/search/transpo/tr...
    Added: Thu Feb 05 2009, Hits: 304, Reviews: 0  Write review   Cached

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