Recombinant site detection - (Jul/13/2005 )

hi

i am interested in finding the recombinant regions in a new strain of virus . i have the sequences of several related strains too. which will be the best program to find out the sites?
is there any book or site where i can find out more about analysis phylogenic output and how to find the recombinant sites ?
please help

-phytoviridae-

QUOTE (phytoviridae @ Jul 14 2005, 01:28 PM)

hi phyto
u can read the journal deleaing this subject it also gives the idea about the tool recombination tool in the follwing site ....

http://bioinformatics.oxfordjournals.org/c...stract/21/3/278

-ruchita_sweet-

thanks ruchita
i will check the site
have u heard of a program called RDP ( recombination detection program) ?

-phytoviridae-

dear ruchita

i couldnt view that journal since its not subscribed by my university

anyways thanks for the info

regards

-phytoviridae-