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Digest, refill an digestion - How can I do it? (Jun/15/2005 )

I have two plasmisds: Pires-GALNS and AATp.

From Pires-GALNS I remove CMV promoter with 5'NruI(blut ends)-NheI(cohesive ends)3'. From AATp I remove promoter AAT region with 5'BglII-EcorI3'. All that ends are not compatible and for that reason I use Klenow pol in order to refill and become all in blut ends. Then I use T4 ligase to ligate AAT promoter with Pires-GALNS without CMV promoter.

After ligation, I transform competent E.coli Ultragold. However, I have not gotten clones. Someone could help... really I have used many different protocols.

thanks for your help

-donisaid-

My first suspect with be the Klenow is not working. Try T4 DNA polymerase, keep you dNTP's in molar excess and run the rxn for 5 min then inactivate the enzyme.
Promega's is pretty good and the rxn works for me.

-pBluescript-

QUOTE (pBluescript @ Jun 15 2005, 10:39 AM)
My first suspect with be the Klenow is not working.  Try T4 DNA polymerase, keep you dNTP's in molar excess and run the rxn for 5 min then inactivate the enzyme.
Promega's is pretty good and the rxn works for me.


do you have the complete protocol?... i mean, DNA and dNTPs concentrations, enzime units, temp, etc.
can i use the digestion rxn or i need to purified the fragments?

-donisaid-