Protein consensus pattern (motif) database - (Apr/21/2005 )
Hi everybody,
i'll be very thankful for the information about if there's any other protein motif databases besides PROSITE, PRINTS, or BLOCKS.
i'm trying to find out a set of motis for a given protein family. My target is the C2H2 proteins and i've searched them in PROSITE database.
However, PROSITE maintains only single one motif,C-x(2,4)-C-x(3)-[LIVMFYWC]-x(8)-H-x(3,5)-H, for a protein family, while what i need is a set of motifs.
Really hope you could please offer me any suggestion or information, big thanks in advance!
Regards,
Hugo
-hugoling-
http://www.isrec.isb-sib.ch/cgi-bin/hits/hits_index
maybe it could help you to find a set of motifs
-hndanny-
big thanks to hndanny^^
-hugoling-
It's worth to try this
http://motif.genome.jp
-dtle-
QUOTE (dtle @ Jun 11 2005, 01:22 AM)
prosite, smart, pfam ... ...
http://prodes.toulouse.inra.fr/prodom/current/html/home.php
http://www.ebi.ac.uk/interpro/
http://us.expasy.org/prosite/
http://smart.embl-heidelberg.de/
-cyberpostdoc-