Formatting Blast output - Formatting Blast output (Jan/07/2005 )

I am using "alignment without identities" and i have my blast result stored in an output file where i have the alignment for every "60" positions. So for example if my query sequence is "600" long then i have 600/60 -> 10 groups of aligned sequences.

Is there any way to have just one single line, so that i have just one group of all aligned sequences from length 1-600. Is there any ways to set the parameter for that. I am using bioperl + remote blast. Thanks.

-Paddy

Do you want to get the global alignment result?
Blast is local, so you can try FASTA
Did i understand you right?