need help in using Amadeus program - (Oct/06/2008 )

has anyone used this motif finding algo before?
i've gotten the dataset published in their paper to work but i can't get it to work with my set of sequences.
is there a specific formatting for each of the file inputs?

i haven't used it but the website says:

"Note that the sequences file should be in fasta format, in which the header of each sequence contains its name (>geneName), and the TSS of each gene is assumed to be located at the end of the sequence."

you can check it out here:

amadeus overview