phylogenetic tree - (Sep/23/2008 )
Hello everybody,
Does anyone know an easy to use software to make phylogenetic trees whith several sequences?
Thanks
-truchi-
The program you need to use is highly dependable on the number of sequences you are running.... But just to mention a few you can download Mr. Bayes, BioEdit, Mega, Treeview, ClustalX, and Dambe
-EMAG-
i had used clustal x, mega and clustal w. They are free at the internet.
-merlav-
QUOTE (merlav @ Sep 23 2008, 09:25 AM)
i had used clustal x, mega and clustal w. They are free at the internet.
MEGA4 probably can do it all. It is more use-friendly in my opinion and it's free!
Convert everything into ONE big fasta file then just load it in MEGA4.
-Hanming86-
Yep I would use MEGA.
A small rule for creating valid trees as a newbie:
For very similar sequences identity greater than 80% use the Maximum Parsimony Method
between 30-80% NJ Method
Less than 30% use Maximum likelihood.
If you need more detailed information, message me or join the group phylogenetic analysis in ResearchGATE (see my signature)
Best
AdoMad
-AdoMad-