Multiple sequence alignment? - (Sep/15/2008 )

I have two cathegories of DNA sequences. Shorter sequences and longer sequences. I would need to align each of the shorter sequences to the longer ones. With program would you suggest for doing this?

Thank you for any help

-wolfram-

You could do it in Vector NTI or even DNA sequencher (also in Demo version)

-scolix-

QUOTE (scolix @ Sep 15 2008, 08:24 AM)

You could do it in Vector NTI or even DNA sequencher (also in Demo version)

Thank you mr. scolix Do you think Megablast would be equaly good as the programs you suggest?

-wolfram-

QUOTE (wolfram @ Sep 15 2008, 02:54 PM)

QUOTE (scolix @ Sep 15 2008, 08:24 AM)

You could do it in Vector NTI or even DNA sequencher (also in Demo version)

Thank you mr. scolix Do you think Megablast would be equaly good as the programs you suggest?

I havn't used Megablast so have no idea.

-scolix-