Help: JIGSAW- gene prediction - (Aug/22/2008 )

Hi all,

I am having problem to run this program..I have no idea how to create the seearch PATH! Anybody can guide me?

Thank you in advanced.

-mes08-

Please, can you specify in which operating system are you trying to install this software?

Are you having problem in this specific step of the tutorial:

QUOTE

Make sure run_jigsaw.pl is in your search path and type:

run_jigsaw.pl -f seq -e my_train_dir/my_evidence_list_run.txt -d my_train_dir -l run_list.txt -o jigsaw_output.gff

If you are stuck in this step, the problem is not in jigsaw, you just have to set a variable in an Unix environment.
You don't have to do it necessarly, it is just a convenience.
Try to run jigsaw by movind (with the cd command) to the directory where you have installed it, and run it with ./run_jigsaw.pl and all the parameters you need.

-dalloliogm-