which array platform fro ChIP -chip + /-exaction program you prefer - sharing your ChIP-chip experience on TF and Histone modification (Jun/26/2008 )
Dear ChIP -chip Guys,
I used once ChIP-Chip custom service with which the Affymetrix arrays
and its peak exaction program have been applied.
Since Genome research ( Vol18 issue 3 2008) published one study which
made a comparison of d Affy, Nimbengen, Agilent arrays; and I could
like to perform another run ChIP -chip using different model organism
from first trial ( i.e. mouse ) ; could you like to be so kind to share any of
your experience /comment or expertise with us?
Thanks a lot !
YZ
-zy101-
QUOTE (zy101 @ Jun 26 2008, 05:44 PM)
Dear ChIP -chip Guys,
I used once ChIP-Chip custom service with which the Affymetrix arrays
and its peak exaction program have been applied.
Since Genome research ( Vol18 issue 3 2008) published one study which
made a comparison of d Affy, Nimbengen, Agilent arrays; and I could
like to perform another run ChIP -chip using different model organism
from first trial ( i.e. mouse ) ; could you like to be so kind to share any of
your experience /comment or expertise with us?
Thanks a lot !
YZ
I used once ChIP-Chip custom service with which the Affymetrix arrays
and its peak exaction program have been applied.
Since Genome research ( Vol18 issue 3 2008) published one study which
made a comparison of d Affy, Nimbengen, Agilent arrays; and I could
like to perform another run ChIP -chip using different model organism
from first trial ( i.e. mouse ) ; could you like to be so kind to share any of
your experience /comment or expertise with us?
Thanks a lot !
YZ
We've being using Nimblegen and Illumina DNA methylation. Both gave results and were easy to handle and analyze. If you are comparing to expression data I recommend Illumina. Nimblegen expression sucks
-nanita-