transmembrane prediction - (May/19/2008 )

Hi,

This is my first time doing transmembrane prediction for my proteins. Can anyone recommend a good website to predict them?
Thanks

Cheers
Ashley

You can have a look there:
- http://pongo.biocomp.unibo.it/pongo/
They combine the results from various membrane prediction (including the ones posted by cellcounter) to present a better prediction.

Also, have a look at this review:
- Membrane protein prediction methods (Punta et al, review)