Protocol Online logo
Top : Forum Archives: : Molecular Biology

weak RT-PCR product - (Aug/17/2007 )

Hi all, I've been doing one-step RT-PCR to clone five genes from 1st strand cDNA; the same process worked very well for one gene (I've cloned it succesfully); but I'm getting weak PCR product and lots of primer dimer for the 2nd gene; I used this pcr product to do TOPO-TA cloning; I get mostly blue colonies in selection plate, there are some white colonies but when I pcr-screen them for insertion- I don't get product;

I want to get stronger band of my GOI and no or less primer-dimer in RT-PCR; can any one help me out with suggestions if any? Thanks in advance.

-shilpi-

Did you try to optimize your PCR reaction (temperatures, concentrations etc.)?

-krümelmonster-

If your primer are not good designed, If you can design new one.
If you can’t, try purifying your RT-PCR product and trying to reamplify, it has worked for me.

-aztecan princess-