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whole gene synthesis for expression - (May/02/2007 )

Hi

I cloned a gene in several vectors and look for expression but none of the cases yield the protein. Then i switched to yeast expression but the result was same no expression. Now i am thinking to synthesize the whole gene by optimizing the codon for expression in bacteria by artificial gene synthesis. Had there been anybody done this previously to overcome the protein expression problem. I wanted to make sure that this strategy would work because the syntheis will cost very high. Please give me details of the following

1. How to optimize the codon for expression in E coli? Any software available
2. Which gene syntheis company is good for the synthesis?

-sktewary-

Hello sktewary,

This is not an answer to your question, you say you get no expression. How come, is it leathal? wrong folding / lack of activity? I would think, ad hoc, that it should be possible to express it some how, without doing synthesis. Cheers


QUOTE (sktewary @ May 2 2007, 07:40 PM)
Hi

I cloned a gene in several vectors and look for expression but none of the cases yield the protein. Then i switched to yeast expression but the result was same no expression. Now i am thinking to synthesize the whole gene by optimizing the codon for expression in bacteria by artificial gene synthesis. Had there been anybody done this previously to overcome the protein expression problem. I wanted to make sure that this strategy would work because the syntheis will cost very high. Please give me details of the following

1. How to optimize the codon for expression in E coli? Any software available
2. Which gene syntheis company is good for the synthesis?

-Chimp-

QUOTE (sktewary @ May 3 2007, 08:10 AM)
Hi

I cloned a gene in several vectors and look for expression but none of the cases yield the protein. Then i switched to yeast expression but the result was same no expression. Now i am thinking to synthesize the whole gene by optimizing the codon for expression in bacteria by artificial gene synthesis. Had there been anybody done this previously to overcome the protein expression problem. I wanted to make sure that this strategy would work because the syntheis will cost very high. Please give me details of the following

1. How to optimize the codon for expression in E coli? Any software available
2. Which gene syntheis company is good for the synthesis?

-namy-

QUOTE (sktewary @ May 3 2007, 08:10 AM)
Hi

I cloned a gene in several vectors and look for expression but none of the cases yield the protein. Then i switched to yeast expression but the result was same no expression. Now i am thinking to synthesize the whole gene by optimizing the codon for expression in bacteria by artificial gene synthesis. Had there been anybody done this previously to overcome the protein expression problem. I wanted to make sure that this strategy would work because the syntheis will cost very high. Please give me details of the following

1. How to optimize the codon for expression in E coli? Any software available
2. Which gene syntheis company is good for the synthesis?



Hi...

Yaa...u r right
you can go for the artificial synthesis of gene.I've done that for 3.7 kb gene and could express the corresponding protein which is biologically active.
The best software for codon optimization is Gene designer from DNA 2.0 .
Just look into that once.

-namy-