Trouble staining for Fluorescent Microscopy - unspecific labeling (Feb/14/2007 )
Hello !
I am detecting a protein in primary cells (from mice) by immunoflourescence microscopy.
The problem is that these mice are knocked out for that protein, so I shouldn't see the staining in the fluorescent microscopy!
Does anyone know why is this happening to me?
I have already reduced the primary Ab concentration and changed the blocking solution (to goat serum).
I use the same antibody to detect the protein by western-blot in wild type cells and it works perfectly.
I would be very grateful if anyone could post the protocols that they use for immunofluorescence detection!!!!
I think there could be a problem with my technique (cell fixation, permeabilization, ...)
Thanks very much.

I am detecting a protein in primary cells (from mice) by immunoflourescence microscopy.
The problem is that these mice are knocked out for that protein, so I shouldn't see the staining in the fluorescent microscopy!
Does anyone know why is this happening to me?
I have already reduced the primary Ab concentration and changed the blocking solution (to goat serum).
I use the same antibody to detect the protein by western-blot in wild type cells and it works perfectly.
I would be very grateful if anyone could post the protocols that they use for immunofluorescence detection!!!!
I think there could be a problem with my technique (cell fixation, permeabilization, ...)
Thanks very much.

there are two prevalent answers:
A1: may be your cell do express the protein that should be knocked out
or
A2: your Ab cross-reacts with isoforms or other proteins with similar epitopes; if you use a polyclonal Ab try better a monoclonal
also, like westerns, you need to block and wash, etc, properly...also might want to tone down your secondary/detection
perhaps it would be easier if you posted YOUR protocol, and we can see if we can find errors?