gene annotation? - (Sep/23/2006 )

I have sequence from several BACs with 100kb inserts. I just blasted these against the e coli protein database and now have a nice list of protein hits.

is there a quick automated way for me to categorize what types of genes are present in my critter?

thanks much!

-symbiontgirl-

just simply use a curated database.

-akhshik-

QUOTE (symbiontgirl @ Sep 23 2006, 04:37 PM)

Please excuse me if I'm wrong, but I think DAVID 2006 will do a nice job.
I'm unsure of the www, but doing an internet search will bring it up

-phossein-

What is your list of protein hits -- GI numbers? Acession numbers? What information would you like about them?

Can you show me an example of one of your "protein hits" and the corresponding info you seek?

-HomeBrew-