multialignament in doc file... convert in fasta or clustal.. - (Sep/08/2006 )

Hi,
my problem is this:
I have done a multialignament in a doc file.... and now if I want to use some bioinformatic programs I need convert in other file as FASTA or others.... how can I do?
please help me!!!

Ps: sorry for my "spaghetti" english!

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Please post your file. Tell us how you want your output... I can write a program to dump each sequence into fasta format but you will not have an alignement afterwards.... the alternative is to do something like clustalw (see below).

>seq1
AAAAAAAAAAAAAA----------BBBB------

>seq2
----------AAAAAAA-----------CBBBBBBB

>seq3
----AAAAAAAAAAAAAAA-------BBBBBB

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