Perl script - parsing non-phosphorylated protein sequences from a Uniprot flat f - (Jul/21/2006 )
QUOTE (HomeBrew @ Jul 22 2006, 10:58 PM)
I notice you're not using strict or enabling warnings, both of which you should always, always, always do. Did I mention you should always enable strict and warnings? 
I have been told by a few people to use these, but I just forget to include them as I am so imersed in writing the actual code
Will definately get into the habit of using these.QUOTE (HomeBrew @ Jul 22 2006, 10:58 PM)
Is the problem with blastclust one of blastclust on Windows, or Perl on Windows?
I think the problem is with the whole blastclust package which doesn't really work well on Windows. Usually it says the job is done but my output file remains empty. So I stick to using blastclust on Unix.
I will try out this perl script asap and since I've asked help from a professional, I'm sure it'll work very well
Thank you!!
Sara
-sara.pl-
QUOTE (sara.pl @ Jul 23 2006, 10:55 AM)
...and since I've asked help from a professional, I'm sure it'll work very well
Not hardly -- I'm just a molecular biology science geek who taught himself some Perl...
Hope it works out -- yell if you need any more help...
HB
-HomeBrew-
QUOTE (HomeBrew @ Jul 23 2006, 10:08 PM)
Not hardly -- I'm just a molecular biology science geek who taught himself some Perl...
Hope it works out -- yell if you need any more help...
HB
Hope it works out -- yell if you need any more help...
HB
Well I must say, you taught yourself brilliantly! I thought you were a computer science geek! Lol! I'm more of a biochemist but in order to obtain my MSc in Bioinformatics I have to do some programming, which is a nightmare!
The networks are down at our University today so I can't run the blastclust. Will have to wait for a couple of days
I'll let you know how it goes. Though instead of yelling for help, I might scream for help!!! Enjoy...... Sara
-sara.pl-