Repetive sequence - (Jun/21/2006 )

Dear Forumers,
I am trying to look at repetitive sequence of virus (EBV) genome. Can anyone suggest me a good software which allow mw to analyse the repetitive sequence of genome.

Thank you
Oche.

---

what kind of analysis do you want to do with theses...?

---

not exactly sure what you are after, but try this:
http://www.repeatmasker.org/

---

To locate tandem repeat, invert repeat..... ?

---

Dear Hadrian,
Yes you are right

any idea?

---

What exact analyses do you want to do with them? Compare them to others, find secondary structures?

---

Have a look at miropeats, it provides good graphical representations of repeats....
http://www.genome.ou.edu/miropeats.html

---

Try REPuter, this is a program for Fast Computation
of Degenerative Repeats in Complete Genomes.

---