Protocol Online logo
Top : Forum Archives: : Bioinformatics and Biostatistics

software for gene designing - (May/08/2006 )

Hi,

I would like to design genes for expression in prokaryote aswell as eukaryote.

Can anybody suggest me the best software for synthetic gene design for both prokarytes and eukaryotes.

I couldnt get the one software which can optimise the gene for better expression ( coodn usage,coodn adoptation, mRNA secondary structure , restriction sites, CpG islands, intrinsic transcription terminators, ribosomal binding sites).


I am ready to go for commercial ones.so can anybody plz suggest

-namy-

QUOTE (namy @ May 8 2006, 02:16 AM)
Hi,

I would like to design genes for expression in prokaryote aswell as eukaryote.

Can anybody suggest me the best software for synthetic gene design for both prokarytes and eukaryotes.

I couldnt get the one software which can optimise the gene for better expression ( coodn usage,coodn adoptation, mRNA secondary structure , restriction sites, CpG islands, intrinsic transcription terminators, ribosomal binding sites).


I am ready to go for commercial ones.so can anybody plz suggest

there are several web interface software that you can use to find gene expression
Ensembl
NCBI
GeneMarker
GeneId
GenScan

thank you
Sweetie

-Sweetie-