Problems with Stratagene Site Directed Mutagenesis - (Apr/08/2009 )
site directed mutagenesis kit is classified by vector size. it seems >6kb or <=6kb?! what size is your vector?
parkerrhm on Apr 10 2009, 11:44 AM said:
my vector backbone size is 4.4kb while the insert will be 1.5kb. I assumed it would be total of 5.9kb??
yean_ny_nie on Apr 10 2009, 01:06 PM said:
parkerrhm on Apr 10 2009, 11:44 AM said:
my vector backbone size is 4.4kb while the insert will be 1.5kb. I assumed it would be total of 5.9kb.
If I got this band (as indicated on the gel picture) after pcr amplification as below, does it mean that my site-directed mutagenesis should be successful? Is it okay if I use other supercompetent cells (e.g. self-prepared JM109 supercompetent cells) instead of the Xl-1 blue supercompetent cells provided by Stratagene?
By the way, I'm using LB Broth instead of the recommended NYZ broth during the cells' growth as our lab does not provide us with the latter one. Could this affect the transformation efficiency as well?
During the heat shock procedure, we are using 1ml eppendorf tube instead of the 14ml falcon round-bottom tube as my supervisor didn't order any. Is there anyone try using eppendorf tube and was successful?
Thanks lot.
chijing on Apr 22 2009, 07:00 AM said:
yean_ny_nie on Apr 10 2009, 01:06 PM said:
parkerrhm on Apr 10 2009, 11:44 AM said:
my vector backbone size is 4.4kb while the insert will be 1.5kb. I assumed it would be total of 5.9kb.
If I got this band (as indicated on the gel picture) after pcr amplification as below, does it mean that my site-directed mutagenesis should be successful? Is it okay if I use other supercompetent cells (e.g. self-prepared JM109 supercompetent cells) instead of the Xl-1 blue supercompetent cells provided by Stratagene?
By the way, I'm using LB Broth instead of the recommended NYZ broth during the cells' growth as our lab does not provide us with the latter one. Could this affect the transformation efficiency as well?
During the heat shock procedure, we are using 1ml eppendorf tube instead of the 14ml falcon round-bottom tube as my supervisor didn't order any. Is there anyone try using eppendorf tube and was successful?
Thanks lot.
We use eppendorfs and they work very well the NYZ broth isnt a problem as we use SOC media (I dont know if this has something LB doesnt but maybe someone will!)
Good luck youll get there eventually!
We use eppendorfs and they work very well the NYZ broth isnt a problem as we use SOC media (I dont know if this has something LB doesnt but maybe someone will!)
Good luck youll get there eventually!