Fragment analysis software for linux - (Jun/24/2013 )

Hi

I haven't been able to find a program that reads .fsa files and runs natively under linux. Currently I'm using PeakScanner in Virtualbox, which isn't ideal. I would appreciate if someone could point me to an appropriate program, preferably a free one.

Thanks.

-mboss-

not sure what you want to analyse (don't know peakscanner), but software based on java should do the job?

-hobglobin-

How about Traceviewer (I haven't used it but it is win, linux and mac supported).

-bob1-

What I need is to score microsatellite (and AFLP) markers (i.e. I need to look at a .fsa chromatogram to check out the quality of the peaks and assign fragment lengths).

I haven't been able to find anything in java or in R. Traceviewer is for DNA sequences, not fragments.

-mboss-

I found this for R: http://people.oregonstate.edu/~knausb/software/Genomatic_users_manual_v03.pdf (PDF)

Also: http://sourceforge.n...ts/genographer/

-bob1-