Protocol Online logo
Top : New Forum Archives (2009-): : DNA Methylation and Epigenetics

DNA Methylation and genomic variation - (Mar/06/2013 )

I am trying to study the relationship between epigenomic and genomics variations. Namely I am interested in the relationship between methylation and indel variation. I am searching for data set that contains both methylation data and indel (or SNP) data for the same genome. I have found many SNP datasets however they are collected from different genomes. The SNP data that come from single genome is protected and I cannot downnload it. any ideas?
Thanks for your help.
Regards

-marakeby-

Sounds like an interesting idea. Which database are you trying to download SNP data from? NCBI FTP server should allow you to download SNP data.

-pcrman-

Hi try the HAPMAP data, some have been bisulfite sequenced (publication in PLos genetics if I remember, and some whole genome BS in the epigenome project) with hiseq and hiseq 100bp paired-end data is available from 1000 genomes.

best

-et2b-