Is there any software that can predict DNA binding proteins based on input DNA s - (Dec/03/2012 )

By mutating a DNA binding site for a protein, I seem to have created a new binding site for some other protein. This speculation is based on a new phenotype being observed. Now I want to know if there is any software that can predict a protein binding to the mutated sequence. Thank you all in advance.

Probably not as these sorts of interactions are so diverse.

http://www.gene-regulation.com/pub/programs.html