big differnece in my primers Tm - (Jan/19/2012 )
Hello
I have to do cloning and I have cDNA but the problem is with primers, I designed the primers and eventually one of them has Tm 66 the other is 80, I did gradient PCR with control DNA and I have very small barely seen band at 76, can i proceed my experiment though or should I redesign my primers?
any advice will be appreciateed.
Thank you so much in advance.
-zogene-
Tm 80 is really high. "At 76" means what? Barelly seen band would be difficult to clone. I would redesign.
-Trof-
As it's a gradient PCR 76 surely refers to 76°C as one of the annealing temperatures (as lowest?). Anyway I'd redesign it too, for me around 72°C is kind of limit (then having a two step PCR) and the differences anyway shouldn't be too large.
-hobglobin-