Protocol Online logo
Top : New Forum Archives (2009-): : Molecular Cloning

sequencing primer: T7 or T7promoter? - (Nov/04/2009 )

I am going to send my recombinant plasmid to a sequencing facility. I used pGEM Teasy vector which contains a T7 promoter. The form that I am filling up gives 2 options for T7 as sequencing primer namely T7 (AATACGACTCACTATAG) and T7 Promoter (TAATACGACTCACTATAGGG). These primers target the same site in the plasmid but vary a bit in length. Please help me choose which should I use.
Thanks!

-kristian-

kristian on Nov 5 2009, 11:36 AM said:

I am going to send my recombinant plasmid to a sequencing facility. I used pGEM Teasy vector which contains a T7 promoter. The form that I am filling up gives 2 options for T7 as sequencing primer namely T7 (AATACGACTCACTATAG) and T7 Promoter (TAATACGACTCACTATAGGG). These primers target the same site in the plasmid but vary a bit in length. Please help me choose which should I use.
Thanks!

The longer the complementary sequence, the lower the chance you got the contaminated result, I think. So the longer sequence would be my choice

-Quasimondo-

I would choose T7 promoter as well.

-jiajia1987-

Quasimondo on Nov 5 2009, 02:25 PM said:

kristian on Nov 5 2009, 11:36 AM said:

I am going to send my recombinant plasmid to a sequencing facility. I used pGEM Teasy vector which contains a T7 promoter. The form that I am filling up gives 2 options for T7 as sequencing primer namely T7 (AATACGACTCACTATAG) and T7 Promoter (TAATACGACTCACTATAGGG). These primers target the same site in the plasmid but vary a bit in length. Please help me choose which should I use.
Thanks!

The longer the complementary sequence, the lower the chance you got the contaminated result, I think. So the longer sequence would be my choice

Thanks for your help! :)

-kristian-

jiajia1987 on Nov 5 2009, 02:50 PM said:

I would choose T7 promoter as well.

Thanks! :)

-kristian-