Protocols
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BLAST (bl2seq) (NCBI)
Align two (or more) sequences
http://blast.ncbi.nlm.nih.gov/Blast.cgi?PAGE_TYPE=...
Added: Sat Apr 03 2010, Hits: 394, Reviews: 0 Write review Cached - ClustalW2 (EMBL-EBI)
ClustalW2 is a general purpose multiple sequence alignment program for DNA or proteins. It produces biologically meaningful multiple sequence alignments of divergent sequences. It calculates the best match for the selected sequences, and lines them up so that the identities, similarities and differences can be seen. Evolutionary relationships can be seen via viewing Cladograms or Phylograms.
http://www.ebi.ac.uk/Tools/clustalw2/index.html
Added: Sat Apr 03 2010, Hits: 343, Reviews: 0 Write review Cached -
Multiple Sequence Alignment by CLUSTALW
(GenomeNet)
Support Formats: FASTA (Pearson), NBRF/PIR, EMBL/Swiss Prot, GDE, CLUSTAL, and GCG/MSF
http://align.genome.jp/
Added: Sat Apr 03 2010, Hits: 117, Reviews: 0 Write review Cached