Protocol Online logo
Top : Forum Archives: : SDS-PAGE and Western Blotting

sds page bands appearing below expected for crp - sds page bands appearing below expected (Dec/15/2007 )

Hi! I am using 10 % sds page mini gel preparation.I cast my own gel using regular protocol.


Normally when i run C reactive protein sample for a a 10 % sds gel i get the band half way through the length of the gel.
Now i have casted a fresh batch of sds gel but i am getting crp bands way below the expected positon almost at the end {3/4 th length of gel] of the gel length.
What may have been the problem?

-arachis-

QUOTE (arachis @ Dec 15 2007, 09:22 AM)
Hi! I am using 10 % sds page mini gel preparation.I cast my own gel using regular protocol.


Normally when i run C reactive protein sample for a a 10 % sds gel i get the band half way through the length of the gel.
Now i have casted a fresh batch of sds gel but i am getting crp bands way below the expected positon almost at the end {3/4 th length of gel] of the gel length.
What may have been the problem?


self-cast gels are hardly to re-produce 100%ly; better use reference standard proteins to calibrate your system

-The Bearer-

are you sure you added the correct amount of acrylamide?

used the right acrylamide stock (acrylamide concentration and acryl/bis ratio)?

added the correct amount of other components?

ensure that you actually have a 10% gel.

did you let the acrylamide polymerize completely?

was your electrode buffer fresh? was it made correctly?

check the pH and also ensure that it is the right concentration.

-mdfenko-

I do not agree with the difficulty of reproducing self-casted gels, but I agree on using a commercial protein ladder.

As for what may be the problem, there can be many things! Maybe the % of acrylamide of your gel was not good, maybe the voltage was set too high, maybe the gel migrated too long, etc.

-Madrius-

Thanks guys for all the replies.May be the gel migrated to long or may be some problem with polymerization.

-arachis-