CGH from Nimblegen - Data interpretation (Jul/12/2007 )

Hey ppl,

Does anyone have any idea on how to interprete the results of our CGH from nimblegen? They are supposed to depict them as log2 ratios but do not say if it´s a Cy3/Cy5 or Cy5/Cy3 ratio. If these make any sense to you then please post your advice!

Thank you!

Hi,
In the Nimblescan software package when generating the *.probe file, you need to tick off the box whether you want the Cy3/Cy5 ratio displayed or whether you want the Cy5/Cy3 ratio displayed.
Hope this helps